rs214597461 SNP Detail

Summary

• ID
  rs214597461
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60554064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATGCTA CATTGCTGCT
  TGAACACGCA GTGGGCATAC TGATACGGTT TAGCAGCTTG CAACTGCTGT AGGGTTTGAG
  GAATGTTGGA GCAAGAACAG AGAAAGCTGA GAGACCCAGG TTTGAATCCA GACTCCACTG
  GCTGTGGGAT TTTAGAAAAA CTGCTAGCAT CTGAGCTTAT CCATCAGAAG TGTGTGTGTG
  G
  GGGGGGGGGG GGAGGGGGTG GAGGTGGGGG TAGGAGGGTA GGGTATAAGT GTGATGAAAC
  TTCCAAACCA CCTTTCATAT CTCTCTTGAT TCCAGGAGCC TTCCTTAATG GGCTGTTAAT
  TTCCTGTAAT GGAAGCACAT ATTTGTCCTT TTAAATGAAC TCAGATGTGA GAAAACATTT
  CCATTTGAAA TTCAAAACCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss354165822	MGP_WTSI_2_60561777	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs214597461					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354165822	MGP_WTSI_2_60561777	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60554064 () rs orientation: forward

Symbol	Name	Function Class
Itgb6	integrin beta 6	1077 bp upstream
Rr557687	regulatory region 557687	1088 bp distal
Rr557688	regulatory region 557688	587 bp distal
Tssr24212	transcription start site region 24212	1178 bp upstream
Tssr24213	transcription start site region 24213	1063 bp upstream
Tssr24214	transcription start site region 24214	1049 bp upstream