rs214627575 SNP Detail

Summary

• ID
  rs214627575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCCCAG GTCAGAAAAC
  ACTGCCTCTT GTTTTTATCT CGTAGAATGA GAAAGGAATC AGAATAGTTT TGAACTCAAA
  TAGGTCTCAC TTCCTCTGTG AGGATTCTGG GTCCTGGGGA TTCTAATGCC ATCTTTTAAA
  GAAGCCCGTT CTTGTGGGCG AACATTGTCC CCGTGGCTGT GACTTGGTGA CCTTCATACA
  R
  CTGCTTGAAG GCTTAGAGAA GAAGTCATGC TACATTGGAG CACTAGGAGC CCTTTCTAAA
  TAAGCAAGCT GTTGTGAGTA CACTGGAGAG CTGCAGTTGA GACCCTGCTA TCTTCCCGCC
  CAGACTCTGC AGAGGACGTT CGTAAGTTGT GCCCACGGTG CCCACTCCTG ACTCCGTTCA
  ACGATACCAA CGTGGTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628360	MGP_WTSI_16_22895143	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214627575					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628360	MGP_WTSI_16_22895143	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahsg	alpha-2-HS-glycoprotein			Intron
				Noncoding-Transcript-Variant
Gm30505	predicted gene, 30505			684 bp upstream
Rr513336	regulatory region 513336			740 bp distal
Rr513337	regulatory region 513337			274 bp distal
Tssr4819	transcription start site region 4819			261 bp upstream
Tssr4820	transcription start site region 4820			877 bp upstream
Tssr137562	transcription start site region 137562			1899 bp downstream
Tssr137563	transcription start site region 137563			829 bp downstream
Tssr137564	transcription start site region 137564			799 bp downstream
Tssr137565	transcription start site region 137565			662 bp downstream
Tssr137566	transcription start site region 137566			653 bp downstream
Tssr137567	transcription start site region 137567			285 bp downstream
Tssr137568	transcription start site region 137568			254 bp downstream
Tssr137569	transcription start site region 137569			233 bp downstream
Tssr137570	transcription start site region 137570			216 bp downstream
Tssr137571	transcription start site region 137571			106 bp upstream
Tssr137572	transcription start site region 137572			129 bp upstream
Tssr137573	transcription start site region 137573			223 bp upstream
Tssr137574	transcription start site region 137574			244 bp upstream
Tssr137575	transcription start site region 137575			250 bp upstream
Tssr137576	transcription start site region 137576			930 bp upstream
Tssr137577	transcription start site region 137577			1352 bp upstream
Tssr137578	transcription start site region 137578			1423 bp upstream
Tssr140504	transcription start site region 140504			678 bp upstream
Tssr140505	transcription start site region 140505			629 bp upstream
Tssr140506	transcription start site region 140506			209 bp upstream
Tssr140507	transcription start site region 140507			143 bp downstream
Tssr140508	transcription start site region 140508			187 bp downstream
Tssr140509	transcription start site region 140509			206 bp downstream
Tssr140510	transcription start site region 140510			221 bp downstream
Tssr140511	transcription start site region 140511			264 bp downstream
Tssr140512	transcription start site region 140512			1487 bp downstream
Tssr140513	transcription start site region 140513			1498 bp downstream
Tssr140514	transcription start site region 140514			1531 bp downstream