rs214636048 SNP Detail

Summary

• ID
  rs214636048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90785419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCACACCA GGTTTTCAGA
  GGTGATTTGT CCAGTCTCCG TTTCCCCATT TTAAAATGGG GGCAGGGGTT GTCTTCATTC
  CTGTCCAGGC AAAATCTTTC AGAAGGTGTT CCCTAGCTTT GGAAACAGGC CCAGGGGCCA
  GCTGCTCTCT GTGAGAACTG TCACATTTCA TGCTAATGAC ATCTTCCCTC CACAGCAACT
  Y
  GCAGTGGCCT CTGCAAGTTG TCAGTTTTTT TTTTTGACAC TAAAGGCTCC TGTGCCATTG
  AAGGAGTGGC AGGAGGAAGG AGGCTGCTGC CAGGAAAGTA CCTTCCCCGA AGGTGAGAAG
  GTGAGATGAA GTTCCATGCT AGGAAGAGCG CTACTATTTC TGGTCTTGCC ACGGAGAGCA
  AGGACCCTGT GTGGTCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369171209	MGP_WTSI_6_90758431	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214636048					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369171209	MGP_WTSI_6_90758431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90785419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17728	CpG island 17728	1524 bp proximal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr634329	regulatory region 634329	578 bp distal
Rr634330	regulatory region 634330	167 bp proximal
Rr634331	regulatory region 634331	1676 bp proximal
Rr634332	regulatory region 634332	1774 bp proximal
Tssr62052	transcription start site region 62052	1588 bp downstream
Tssr62053	transcription start site region 62053	1642 bp downstream
Tssr62054	transcription start site region 62054	1681 bp downstream
Tssr62055	transcription start site region 62055	1725 bp downstream