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rs214649149 SNP Detail
Summary
  • ID
    rs214649149
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr17:84495684 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACGCCGCCCG CCAGCCCGCG
    GACGTCAGGC TCCTTCTCGG CTTCTCATTG GTCGCCGCCA ATTTTTCCCC TTCGGGGGAG
    GGGAGGAGAG GGGAGGGGAG GGGCGGGCAG CCTGGGCGTC CCGAGCGGCG TGGGGCGTGC
    GGCCCCCTTG GGTCCTGCTG GGTGGCGGCG GCGGGAATAC CTCGCTCTCC TCCGCCTCTA
    S
    GAGTATAACG TTGGAAAGCA CGTACACGTT CTATCTGCCC AGGACGGGGC TACCCGGGAC
    GTGCCTTTCC TCGCCCGATC CGGCTGGGCC GACTGGCGCA GCTTTTATCT CCCATCCTAG
    TTTTTGCTCC GCGCGCGGGA ACAGCAAAAC AGCAATGGTG CGCTTGGCCA AGTTGCTTGG
    GACTAGGAAC GGGGGTCGCG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399282292 MGP_WTSI_17_84587596 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214649149 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399282292 MGP_WTSI_17_84587596 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84495684 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 1004 bp distal
Cpgi9566 CpG island 9566 within coordinates
Gm36279 predicted gene, 36279 1624 bp upstream
Gm56881 predicted gene, 56881 within coordinates
Rr333589 regulatory region 333589 1117 bp proximal
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 82 bp downstream
Thada thyroid adenoma associated 1820 bp downstream
Tssr146045 transcription start site region 146045 1139 bp downstream
Tssr146046 transcription start site region 146046 348 bp upstream
Tssr149655 transcription start site region 149655 1915 bp upstream
Tssr149656 transcription start site region 149656 1874 bp upstream
Tssr149657 transcription start site region 149657 1644 bp upstream
Tssr149658 transcription start site region 149658 1601 bp upstream
Tssr149659 transcription start site region 149659 1565 bp upstream
Tssr149660 transcription start site region 149660 1539 bp upstream
Tssr149661 transcription start site region 149661 1476 bp upstream
Tssr149662 transcription start site region 149662 1436 bp upstream
Tssr149663 transcription start site region 149663 1367 bp upstream
Tssr149664 transcription start site region 149664 1324 bp upstream
Tssr149665 transcription start site region 149665 1252 bp upstream
Tssr149666 transcription start site region 149666 1190 bp upstream
Tssr149667 transcription start site region 149667 1090 bp upstream
Tssr149668 transcription start site region 149668 1066 bp upstream
Tssr149669 transcription start site region 149669 1004 bp upstream
Tssr149670 transcription start site region 149670 499 bp upstream
Tssr149671 transcription start site region 149671 357 bp upstream
Tssr149672 transcription start site region 149672 302 bp upstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 309 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory