rs214650897 SNP Detail

Summary

• ID
  rs214650897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141939423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG TCCTCCAACC TCCCACCCCA
  R
  AATACCCCAG GCTGGGCCAG GGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471193	CHEV_7_149571591	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214650897					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141939423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	1747 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	522 bp upstream
Rr658152	regulatory region 658152	1003 bp distal
Rr658153	regulatory region 658153	129 bp proximal
Tssr70145	transcription start site region 70145	197 bp downstream
Tssr70146	transcription start site region 70146	176 bp downstream
Tssr70147	transcription start site region 70147	1314 bp upstream
Tssr75787	transcription start site region 75787	97 bp upstream
Tssr75788	transcription start site region 75788	75 bp upstream
Tssr75789	transcription start site region 75789	55 bp upstream
Tssr75790	transcription start site region 75790	193 bp downstream
Tssr75791	transcription start site region 75791	221 bp downstream
Tssr75792	transcription start site region 75792	242 bp downstream
Tssr75793	transcription start site region 75793	985 bp downstream
Tssr75794	transcription start site region 75794	1139 bp downstream
Tssr75795	transcription start site region 75795	1163 bp downstream