rs214656092 SNP Detail

Summary

• ID
  rs214656092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCACCGCC CGCCTAATAG CGACTGACGG
  GGACTATAGC CAATAGGAAC AACTGATCCA TAGACGCCAG GAGTAGAGGC GGGGCTGACG
  AAACTTAGAG GTGTGGCGAA CACTAGCTGC CTAGGCGCAG TCCTAGAGTG AGCTCCTCCC
  Y
  GGCCTGTGGA AGCCTAAAGT AAAGCTGATG GGCGGGATAA AATGGAAGCG ACAGCCAAAC
  ACAAACTCTC AAGAGAAGAC GGGACCAATC GGACCGGGAA AGGGAGGAGG GAAGTTCAGC
  CAATAAATAG TAGAGAACGG CCTGGACCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319974405	CHEV_1_133424119	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214656092					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	361 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	within coordinates
Rr396287	regulatory region 396287	51 bp upstream
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	190 bp upstream
Tssr8629	transcription start site region 8629	316 bp upstream
Tssr8630	transcription start site region 8630	359 bp upstream
Tssr8631	transcription start site region 8631	438 bp upstream
Tssr8632	transcription start site region 8632	819 bp upstream
Tssr13595	transcription start site region 13595	1957 bp upstream
Tssr13596	transcription start site region 13596	1924 bp upstream
Tssr13597	transcription start site region 13597	1695 bp upstream
Tssr13598	transcription start site region 13598	994 bp upstream
Tssr13599	transcription start site region 13599	952 bp upstream
Tssr13600	transcription start site region 13600	797 bp upstream
Tssr13601	transcription start site region 13601	249 bp upstream
Tssr13602	transcription start site region 13602	157 bp upstream
Tssr13603	transcription start site region 13603	2 bp upstream