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rs214672403 SNP Detail
Summary
  • ID
    rs214672403
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130336 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATCTTTTTA GTATTTTCCT
CCCCCTTTTC TTCTTCCACC AGATCTCTCC TTCACTCCTA CCCATCTTTT ATTCTTCCTT
TTTCTCTTCT TCTCCATCGT TAATTCAACT CTTCTTTCCC TTCTGTTCCT CAATTCTCCT
CCTCCCTGCT TCTTCATTTC TTTGAATACT ATCCATCTTC ATCCCTCTTT CTCTTCATTC
Y
TCTCTTCTAC CCTTTCTTTT CCTTCTGTTC CTCCACATGC ATCCCTGTGG TTTTCCACAC
ATTCTCTCTC CTCTCTTTCC CCTTCACCCT CTACCTCCTC CTCTGTCTTT CCTTGTCCTT
TGGTTTCCTC TACAGTGTCT CATCCAATAT CTCCTGCTGT TCTTCCTTCT CTCTGGCATT
TACACTGTTT CTGCTTCTGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156148 MGP_WTSI_7_51736282 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214672403 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156148 MGP_WTSI_7_51736282 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130336 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1672 bp proximal
Tssr2227 transcription start site region 2227 1892 bp downstream
Tssr2228 transcription start site region 2228 829 bp downstream
Tssr2229 transcription start site region 2229 554 bp downstream
Tssr2230 transcription start site region 2230 371 bp downstream
Tssr2231 transcription start site region 2231 244 bp downstream
Tssr2232 transcription start site region 2232 70 bp downstream
Tssr2233 transcription start site region 2233 25 bp downstream
Tssr2234 transcription start site region 2234 121 bp upstream
Tssr2235 transcription start site region 2235 755 bp upstream
Tssr66292 transcription start site region 66292 1988 bp downstream
Tssr66293 transcription start site region 66293 1966 bp downstream
Tssr66294 transcription start site region 66294 1942 bp downstream
Tssr66295 transcription start site region 66295 1677 bp downstream
Tssr66296 transcription start site region 66296 1506 bp downstream
Tssr66297 transcription start site region 66297 1482 bp downstream
Tssr66298 transcription start site region 66298 1427 bp downstream
Tssr66299 transcription start site region 66299 1407 bp downstream
Tssr66300 transcription start site region 66300 1384 bp downstream
Tssr66301 transcription start site region 66301 1368 bp downstream
Tssr66302 transcription start site region 66302 1327 bp downstream
Tssr66303 transcription start site region 66303 1318 bp downstream
Tssr66304 transcription start site region 66304 1313 bp downstream
Tssr66305 transcription start site region 66305 1274 bp downstream
Tssr66306 transcription start site region 66306 1220 bp downstream
Tssr66307 transcription start site region 66307 1171 bp downstream
Tssr66308 transcription start site region 66308 1154 bp downstream
Tssr66309 transcription start site region 66309 1104 bp downstream
Tssr66310 transcription start site region 66310 1035 bp downstream
Tssr66311 transcription start site region 66311 1012 bp downstream
Tssr66312 transcription start site region 66312 993 bp downstream
Tssr66313 transcription start site region 66313 983 bp downstream
Tssr66314 transcription start site region 66314 965 bp downstream
Tssr66315 transcription start site region 66315 958 bp downstream
Tssr66316 transcription start site region 66316 893 bp downstream
Tssr66317 transcription start site region 66317 877 bp downstream
Tssr66318 transcription start site region 66318 836 bp downstream
Tssr66319 transcription start site region 66319 808 bp downstream
Tssr66320 transcription start site region 66320 784 bp downstream
Tssr66321 transcription start site region 66321 760 bp downstream
Tssr66322 transcription start site region 66322 744 bp downstream
Tssr66323 transcription start site region 66323 706 bp downstream
Tssr66324 transcription start site region 66324 653 bp downstream
Tssr66325 transcription start site region 66325 612 bp downstream
Tssr66326 transcription start site region 66326 602 bp downstream
Tssr66327 transcription start site region 66327 582 bp downstream
Tssr66328 transcription start site region 66328 564 bp downstream
Tssr66329 transcription start site region 66329 525 bp downstream
Tssr66330 transcription start site region 66330 512 bp downstream
Tssr66331 transcription start site region 66331 498 bp downstream
Tssr66332 transcription start site region 66332 465 bp downstream
Tssr66333 transcription start site region 66333 430 bp downstream
Tssr66334 transcription start site region 66334 424 bp downstream
Tssr66335 transcription start site region 66335 413 bp downstream
Tssr66336 transcription start site region 66336 399 bp downstream
Tssr66337 transcription start site region 66337 383 bp downstream
Tssr66338 transcription start site region 66338 299 bp downstream
Tssr66339 transcription start site region 66339 267 bp downstream
Tssr66340 transcription start site region 66340 200 bp downstream
Tssr66341 transcription start site region 66341 151 bp downstream
Tssr66342 transcription start site region 66342 122 bp downstream
Tssr66343 transcription start site region 66343 96 bp downstream
Tssr66344 transcription start site region 66344 44 bp upstream
Tssr66345 transcription start site region 66345 77 bp upstream
Tssr66346 transcription start site region 66346 133 bp upstream
Tssr66347 transcription start site region 66347 171 bp upstream
Tssr66348 transcription start site region 66348 212 bp upstream
Tssr66349 transcription start site region 66349 236 bp upstream
Tssr66350 transcription start site region 66350 264 bp upstream
Tssr66351 transcription start site region 66351 272 bp upstream
Tssr66352 transcription start site region 66352 308 bp upstream
Tssr66353 transcription start site region 66353 382 bp upstream
Tssr66354 transcription start site region 66354 396 bp upstream
Tssr66355 transcription start site region 66355 423 bp upstream
Tssr66356 transcription start site region 66356 440 bp upstream
Tssr66357 transcription start site region 66357 454 bp upstream
Tssr66358 transcription start site region 66358 466 bp upstream
Tssr66359 transcription start site region 66359 492 bp upstream
Tssr66360 transcription start site region 66360 504 bp upstream
Tssr66361 transcription start site region 66361 530 bp upstream
Tssr66362 transcription start site region 66362 562 bp upstream
Tssr66363 transcription start site region 66363 579 bp upstream
Tssr66364 transcription start site region 66364 612 bp upstream
Tssr66365 transcription start site region 66365 632 bp upstream
Tssr66366 transcription start site region 66366 652 bp upstream
Tssr66367 transcription start site region 66367 680 bp upstream
Tssr66368 transcription start site region 66368 702 bp upstream
Tssr66369 transcription start site region 66369 736 bp upstream
Tssr66370 transcription start site region 66370 778 bp upstream
Tssr66371 transcription start site region 66371 1203 bp upstream
Tssr66372 transcription start site region 66372 1366 bp upstream
Tssr66373 transcription start site region 66373 1656 bp upstream
Tssr66374 transcription start site region 66374 1714 bp upstream
Tssr66375 transcription start site region 66375 1725 bp upstream
Tssr66376 transcription start site region 66376 1738 bp upstream
Tssr66377 transcription start site region 66377 1777 bp upstream
Tssr66378 transcription start site region 66378 1799 bp upstream
Tssr66379 transcription start site region 66379 1811 bp upstream
Tssr66380 transcription start site region 66380 1844 bp upstream
Tssr66381 transcription start site region 66381 1863 bp upstream
Tssr66382 transcription start site region 66382 1887 bp upstream
Tssr66383 transcription start site region 66383 1997 bp upstream
Tssr72201 transcription start site region 72201 1961 bp upstream
Tssr72202 transcription start site region 72202 1104 bp upstream
Tssr72203 transcription start site region 72203 724 bp upstream
Tssr72204 transcription start site region 72204 124 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory