rs214673539 SNP Detail

Summary

• ID
  rs214673539
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32521142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCTACCAA ACAACAGTTT TCAACTATTT AATGAGATTC
  CACTTCTAAG CTGCACTGAT ACAAAATGCT GGCCGCTTAC ATTGCTATAC GCCATACTAA
  T
  ATGGCACACA ACATCCTAAC TCAATTTCTT GATAATACTA AGTGAAAGTT TACTTTAGAG
  AGTATGTGAA TGCAGTTAAC ATCTGGGCTT AAGAACCAG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324311976	CHEV_13_32429028	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214673539					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32521142 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	1660 bp upstream
Cpgi5422	CpG island 5422	789 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Rr369665	regulatory region 369665	1652 bp upstream
Rr476844	regulatory region 476844	1568 bp proximal
Rr476845	regulatory region 476845	1571 bp proximal
Tssr121995	transcription start site region 121995	1341 bp downstream
Tssr121996	transcription start site region 121996	1395 bp downstream
Tssr121997	transcription start site region 121997	1406 bp downstream