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rs214696913 SNP Detail
Summary
  • ID
    rs214696913
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:87841664 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGAAAGAGA CAGATCTGTG
CCAGTGGCAA ACAAATAAAT GAAAGTTTCT TGAAATATAA ATTTTGTCCA GTGTCATGTT
GGTAAGAAGC TGTCAACCAG TGAAACCATA GTAGTAAGTG AATACTTTGA TGAAATTTGC
TATTCTGCTG TGTATATAGG AGGATGAAAT ATAAAATGAT ATAAAATATA AAACTTATCA
Y
TCTGCTCTTT AGTTTCCAAG AACTTACCAA AAAACATAAG GAGGAGAAAA TAACCTGGAA
ATCCTCTTAG ACCTTAAATG CAAACATAAA TAAATAAATA AATAGATAGA TAGATAGATA
GATAGATAGA TAGATAGATA GATAGTTTCC CTTTTAGTCT AACACTTGCC TAAAATGTGT
TCCATGTAGC AAATGAAACG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365777271 MGP_WTSI_5_88122830 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214696913 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss365777271 MGP_WTSI_5_88122830 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:87841664 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Csn2 casein beta within coordinates
D5Mit12 DNA segment, Chr 5, Massachusetts Institute of Technology 12 57 bp proximal
D5Mit16 DNA segment, Chr 5, Massachusetts Institute of Technology 16 63 bp proximal
D5Mit16.1 DNA segment, Chr 5, Massachusetts Institute of Technology 16.1 163 bp proximal
D5Mit16.2 DNA segment, Chr 5, Massachusetts Institute of Technology 16.2 within coordinates
Tssr1529 transcription start site region 1529 749 bp upstream
Tssr46883 transcription start site region 46883 696 bp upstream
Tssr46884 transcription start site region 46884 709 bp upstream
Tssr46885 transcription start site region 46885 737 bp upstream
Tssr46886 transcription start site region 46886 765 bp upstream
Tssr46887 transcription start site region 46887 782 bp upstream
Tssr46888 transcription start site region 46888 851 bp upstream
Tssr46889 transcription start site region 46889 900 bp upstream
Tssr46890 transcription start site region 46890 915 bp upstream
Tssr46891 transcription start site region 46891 959 bp upstream
Tssr46892 transcription start site region 46892 963 bp upstream
Tssr46893 transcription start site region 46893 991 bp upstream
Tssr46894 transcription start site region 46894 1038 bp upstream
Tssr46895 transcription start site region 46895 1061 bp upstream
Tssr46896 transcription start site region 46896 1156 bp upstream
Tssr51613 transcription start site region 51613 1126 bp upstream
Tssr51614 transcription start site region 51614 1063 bp upstream
Tssr51615 transcription start site region 51615 1007 bp upstream
Tssr51616 transcription start site region 51616 973 bp upstream
Tssr51617 transcription start site region 51617 964 bp upstream
Tssr51618 transcription start site region 51618 725 bp downstream
Tssr51619 transcription start site region 51619 763 bp downstream
Tssr51620 transcription start site region 51620 772 bp downstream
Tssr51621 transcription start site region 51621 781 bp downstream
Tssr51622 transcription start site region 51622 819 bp downstream
Tssr51623 transcription start site region 51623 844 bp downstream
Tssr51624 transcription start site region 51624 862 bp downstream
Tssr51625 transcription start site region 51625 868 bp downstream
Tssr51626 transcription start site region 51626 878 bp downstream
Tssr51627 transcription start site region 51627 893 bp downstream
Tssr51628 transcription start site region 51628 934 bp downstream
Tssr51629 transcription start site region 51629 1026 bp downstream
Tssr51630 transcription start site region 51630 1120 bp downstream
Tssr51631 transcription start site region 51631 1169 bp downstream
Tssr51632 transcription start site region 51632 1463 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory