rs214707810 SNP Detail

Summary

• ID
  rs214707810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66215206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTCTCT TTCCGTCTTG
  CTGGATGGCT AAGTGACTTA TCTAAGATTA CGTGACACGA GGCTTCTCAC TTAGGCTGTG
  CTCATAAACA GCACCCTGGG GTTTCTCCCT GGGGACCTTG AGCTATGTCC TTGTGATGGT
  GGTCCTTGGT ATCCTGGCCG CATTCTTTTT GGTGAACTAG TCCCTCAGAA AAGGAACTAT
  Y
  TTTCCTTCAT CAGTTCCCCA GGCAATCTGG GTATGGTGAC ATATCCCTAT AATCCCAACA
  TTTGGGAGGC TGAGGTAGGA GGGTGGTGAA TCCGAGGCCA GCGGCGAGGT TCTGTCTCAA
  TGAAAACAAA ACAAAATACA GCAAACCCAA AACTGTTCCC CACAGATTTG TCAGGTCTGG
  CTATCAAGCC AATGCCCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367457	MGP_WTSI_14_66596594	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214707810					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367457	MGP_WTSI_14_66596594	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66215206 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Rr494180	regulatory region 494180	159 bp proximal
Tssr126276	transcription start site region 126276	1959 bp downstream
Tssr126277	transcription start site region 126277	1933 bp downstream
Tssr126278	transcription start site region 126278	1894 bp downstream
Tssr126279	transcription start site region 126279	833 bp downstream
Tssr126280	transcription start site region 126280	804 bp downstream
Tssr126281	transcription start site region 126281	1915 bp upstream
Tssr126282	transcription start site region 126282	1954 bp upstream
Tssr126283	transcription start site region 126283	1967 bp upstream
Tssr129270	transcription start site region 129270	2000 bp upstream
Tssr129271	transcription start site region 129271	1963 bp upstream
Tssr129272	transcription start site region 129272	763 bp upstream