rs214728275 SNP Detail

Summary

• ID
  rs214728275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49738887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTGATT TATTGCCCCG
  TCCTTTTTGT ATAGCATGGT GAGTACAGGT AGTTGTTTCA TCTGTAAAGT CAGATCAGTG
  AATGAACAGT AAGACCATCC CTGCCTATTA TTATCTCTGC TTTGTCCATT TTGTTGGTGA
  CTTTAACTTG TGAAACTTGT AAGCAAACAG ACGCTGATTC TCACTTTGTG AAATATTTTC
  W
  TGTTTTTAAT CTCTTTCTAG TAGCTGTCAG AACAATTTGT GATAAAAAAA ATACGTTTTG
  GTAAGAGTTT TGCTCTGGCT TCCTTCCACA CATTCAGGAG TTATCTACTG GATTCTGTAT
  TATCTAGGTC ATGCTTTCTG CTGGGCTCTG GGGACACAAA GGAGATAGCA ACAGGGTACC
  GTCCCCCAGA GAGTCCAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383316552	MGP_WTSI_11_49661562	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214728275					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383316552	MGP_WTSI_11_49661562	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49738887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2801	CpG island 2801	566 bp distal
Gm74054	predicted gene, 74054	1666 bp upstream
Mapk9	mitogen-activated protein kinase 9	within coordinates
Rr446294	regulatory region 446294	1677 bp distal
Rr446295	regulatory region 446295	1297 bp distal
Rr446296	regulatory region 446296	1512 bp distal
Rr446297	regulatory region 446297	104 bp distal
Rr446298	regulatory region 446298	38 bp proximal
Tssr3485	transcription start site region 3485	1111 bp downstream
Tssr101198	transcription start site region 101198	1302 bp downstream
Tssr101199	transcription start site region 101199	1261 bp downstream
Tssr101200	transcription start site region 101200	1246 bp downstream
Tssr101201	transcription start site region 101201	1123 bp downstream