rs214732680 SNP Detail

Summary

• ID
  rs214732680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8731737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG AGGGCTCGGG GACGATTGCT
  Y
  CCAGCCAGCA GCTGCCGGCC CACGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320647894	CHEV_3_8666677	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214732680					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8731737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	1556 bp distal
Cpgi12962	CpG island 12962	within coordinates
Gm64520	predicted gene, 64520	within coordinates
Hey1	hairy/enhancer-of-split related with YRPW motif 1	Intron
Rr573305	regulatory region 573305	1968 bp distal
Rr573306	regulatory region 573306	136 bp distal
Rr573307	regulatory region 573307	467 bp proximal
Rr573308	regulatory region 573308	569 bp proximal
Tssr32550	transcription start site region 32550	878 bp upstream
Tssr32551	transcription start site region 32551	156 bp downstream
Tssr32552	transcription start site region 32552	286 bp downstream
Tssr32553	transcription start site region 32553	320 bp downstream
Tssr32554	transcription start site region 32554	356 bp downstream
Tssr32555	transcription start site region 32555	372 bp downstream
Tssr32556	transcription start site region 32556	600 bp downstream