rs214746425 SNP Detail

Summary

• ID
  rs214746425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:46991760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCGTAGG CAATGGGCGT
  CGCCTGTCCC TTCAATTTTC CTCATCCCCC CAACCCATCC CAGGCTACCT GCCAGGCCGG
  GCCGGGGTGG GGCCGCGGGT CCTCGCGCTG CCAGCAGCCT AGAACCCGTT GCCCGCCAAC
  CGATTCCTCG GTCCCCAACG AGATAAACAC TGCCAGACTT CGTCCTTCCG GCGGGCAGCG
  R
  GACGCGCACG TGCAGTGAGA ATTGCCGGCC CGACAGCTTC AGGGACTTGT AGTCCACGAA
  TTACCCCAGG GCCGAAAGAT GGGGAGCGGG TGGGCGGGGC CGGTTTGTGC GCATGCGCAG
  AACACCAGTT CACGTCGCAC GCCTGAGGGT CACTGGGTAA TGTAGTTCTT TGTGGTCCGG
  GCAGGGGATG GCGGAGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398326253	MGP_WTSI_17_46817783	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs214746425					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326253	MGP_WTSI_17_46817783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46991760 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi9239	CpG island 9239			within coordinates
Klhdc3	kelch domain containing 3			mRNA-UTR
Mea1	male enhanced antigen 1			Intron
				mRNA-UTR
Rr405317	regulatory region 405317			within coordinates
Rr527794	regulatory region 527794			1485 bp distal
Rr527795	regulatory region 527795			within coordinates
Tssr5136	transcription start site region 5136			53 bp upstream
Tssr5137	transcription start site region 5137			101 bp downstream
Tssr144872	transcription start site region 144872			356 bp downstream
Tssr144873	transcription start site region 144873			146 bp upstream
Tssr144874	transcription start site region 144874			204 bp upstream
Tssr144875	transcription start site region 144875			1142 bp upstream
Tssr144876	transcription start site region 144876			1201 bp upstream
Tssr148367	transcription start site region 148367			100 bp upstream
Tssr148368	transcription start site region 148368			78 bp upstream
Tssr148369	transcription start site region 148369			59 bp upstream
Tssr148370	transcription start site region 148370			within coordinates
Tssr148371	transcription start site region 148371			13 bp downstream
Tssr148372	transcription start site region 148372			36 bp downstream
Tssr148373	transcription start site region 148373			1067 bp downstream
Tssr148374	transcription start site region 148374			1079 bp downstream