rs214751088 SNP Detail

Summary

• ID
  rs214751088
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34877357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCAACG CCTGCACTGT
  CAGAGAAGAC TATATGATGA AAAAAAGTAA GATGAAGAAA CCTGTTTGAA AAGGCCCAGA
  GAAAAATGTG CTACTGTCAA AAGCAGCCTG AGTGATGCGC AGTGGGTGGT GCACTGCAGG
  TGGTACTCTG CAGGTGATAC ATTGCAGGTG GTGCACTGCA GGTGGCACTC TGCAGGTGAT
  A
  CATTGCAGGT GGTGCTCTGC AGGTGATACT CCACAGACAG CTTTCTACTC CCTGTGCTTT
  GCCAACTCTA CCATGAGCAA AAACCCAATG CCAACAGACC AAGAACTAGG CCAAACTCAA
  TACAAATACC TAACATTTCA CCTCTTAAAC AGAAAATTAA ATTAAATTTT TAAAATGATT
  TATTTATTTA CTTTGTACAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss393615146	MGP_WTSI_15_34806966	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs214751088					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393615146	MGP_WTSI_15_34806966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34877357 () rs orientation: forward

Symbol	Name	Function Class
Stk3	serine/threonine kinase 3	within coordinates
Tssr133982	transcription start site region 133982	983 bp upstream
Tssr133983	transcription start site region 133983	870 bp upstream
Tssr133984	transcription start site region 133984	1611 bp downstream