rs214763827 SNP Detail

Summary

• ID
  rs214763827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150869822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCTGGA GCTTTCTTTC
  CTCTAGGCTG CAGCTACAGG ATGGATGGTT CTTTGATCTT CCTTGGGGAG TGTTTAGATG
  AGAGGAAGGC ACGGAGTTGG GAGAGGCAGG GAGAGGGAGC TGTAGAGGCA AAGGAGAATG
  GAAGGAGATA GGGGGAAAGT AAGAGACATC ACAAAGTCCC TAGCTGTGCT GTGGAACTGG
  R
  AAAGGAAACT GGGTATCAAT AAAACATTGA CGTCCAATAG AAAGAGCAGT GTTTGTCTGT
  CTGTCTGTCT GTCTGTTTGT TTGTTTGTTT GTTTTTAAAG AAAGAAAAGA AAAGGGGAGG
  GGAGGGGAAG GGAGGGGAGA AAAAATTCTG GGGGAGTTGA AATTTCGTTA TCAAGATTCA
  CTTTGCTGAT CAGCCTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351910639	MGP_WTSI_1_152841201	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214763827					SNP	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351910639	MGP_WTSI_1_152841201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150869822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	278 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	636 bp upstream
Rr420192	regulatory region 420192	1432 bp distal
Rr420193	regulatory region 420193	530 bp distal
Rr420194	regulatory region 420194	191 bp distal
Rr420195	regulatory region 420195	77 bp distal
Rr420196	regulatory region 420196	432 bp proximal
Tssr14167	transcription start site region 14167	916 bp upstream
Tssr14168	transcription start site region 14168	622 bp upstream