About   Help   FAQ
rs214769338 SNP Detail
Summary
  • ID
    rs214769338
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:53748553 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGGCGGGGA TCCCGGCGCA
    GCTTTGTTCC CCGTGCGTGG CCCGCGTCGC CTGTCCTCCC AGCCGCTGCC CTGGGCGCCG
    GAGCGCTTTG TCTGTGTGCG CTGCCCCCCG CGATTCTGCC CCCAGCCCTT TGTTTCGCCG
    CCTTAGGCTC TCTGTGGGAG CCGCTGCGCG CCCCGCATCC CGTCTGCACC TCCACTCCGC
    Y
    CGCTGTCCCT CCTCCCGTGC CCCTTTGTTG TATCCCTCTC TTCAGTAGCT GGGTGACCTG
    CCATAGCCCT GGCACCAGAT TACTGCCGTT CTCTTTCTTC CATTGTCTTT CTCGTGTGTA
    TCCCCTCTCA CCTTTTTCTC TTTGGTCCTC ACCCCCCCCC CCCAAGGCTT TGTCTCCCCT
    ATGTAGTGTC TCATTCTCTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss364963865 MGP_WTSI_5_53982450 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C T C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214769338 SNP C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C T C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss364963865 MGP_WTSI_5_53982450 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:53748553 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15869 CpG island 15869 within coordinates
Rbpj recombination signal binding protein for immunoglobulin kappa J region within coordinates
Rr611645 regulatory region 611645 1841 bp distal
Rr611646 regulatory region 611646 730 bp distal
Rr611647 regulatory region 611647 220 bp distal
Rr611648 regulatory region 611648 within coordinates
Rr611649 regulatory region 611649 279 bp proximal
Rr611650 regulatory region 611650 697 bp proximal
Tssr46226 transcription start site region 46226 1767 bp downstream
Tssr46227 transcription start site region 46227 860 bp downstream
Tssr46228 transcription start site region 46228 834 bp downstream
Tssr46229 transcription start site region 46229 778 bp downstream
Tssr46230 transcription start site region 46230 682 bp downstream
Tssr46231 transcription start site region 46231 543 bp downstream
Tssr46232 transcription start site region 46232 508 bp downstream
Tssr46233 transcription start site region 46233 489 bp downstream
Tssr46234 transcription start site region 46234 145 bp downstream
Tssr46235 transcription start site region 46235 22 bp upstream
Tssr46236 transcription start site region 46236 37 bp upstream
Tssr46237 transcription start site region 46237 189 bp upstream
Tssr46238 transcription start site region 46238 255 bp upstream
Tssr46239 transcription start site region 46239 318 bp upstream
Tssr46240 transcription start site region 46240 385 bp upstream
Tssr46241 transcription start site region 46241 706 bp upstream
Tssr51023 transcription start site region 51023 1946 bp upstream
Tssr51024 transcription start site region 51024 1019 bp upstream
Tssr51025 transcription start site region 51025 622 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory