rs214779399 SNP Detail

Summary

• ID
  rs214779399
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113285634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGAGGA AACCAAGTGT
  AGCCTGTGCC GTTTGTCCTG CGGAAATGAC CATTTCACAA GGTTTCTCCC TATATCTCCC
  CACCCAGTTC CAGGGTGAGG TTCCCCATTA AGACTTCAGC GATGCACTGA TTGTGTAGTT
  CAATGGTTTC TGTTGGAATC TAGGACTCAG TCATTGGCCA CTCACTCAGG CATACAATAA
  K
  CAACGTTTAA TGCGTAATCT GATCTTCCTC AACTCCTAAT CTGGTGGTCT TCTCATTCAG
  CTATTCACAG GTTTCATGGT ATTTGCCCAG GCTTGGGAGT CCAATGCATG CTAGGAACTG
  GGGATTTAGA AGTAAATAGG TCTGGTATTT ACTGAAGATC TCCTAGTAGA ATGGGAGAAA
  ACCAGAAAAT GTCACACTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369709702	MGP_WTSI_6_113258667	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214779399					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369709702	MGP_WTSI_6_113258667	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113285634 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	within coordinates
Cpgi17838	CpG island 17838	638 bp distal
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	1999 bp upstream
Gm67816	predicted gene, 67816	768 bp upstream
Rr399829	regulatory region 399829	2000 bp downstream
Rr636484	regulatory region 636484	1234 bp distal
Rr636485	regulatory region 636485	779 bp distal
Rr636486	regulatory region 636486	278 bp distal
Rr636487	regulatory region 636487	327 bp distal
Tssr58189	transcription start site region 58189	1696 bp downstream
Tssr58190	transcription start site region 58190	1443 bp downstream
Tssr58191	transcription start site region 58191	1427 bp downstream
Tssr58192	transcription start site region 58192	812 bp downstream
Tssr58193	transcription start site region 58193	788 bp downstream
Tssr62434	transcription start site region 62434	887 bp upstream