rs214779606 SNP Detail

Summary

• ID
  rs214779606
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37653698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCTTGT TATTGTCAAT
  AGCACAAGAG GCTAAAGATG GCGCCACTTC CGGTCACGCG GCGCCCGTGG AGAGGCGGCG
  TCACCCTCGC GGAGTGGGGG GTGGAGAGGA GGACCCGAGC GGCCTGGGAG GCGGGGGCGC
  CGACTCACCG TGGGGCGGCT GGAAGCGCCC GGAACGCTCA CTCCGGGCAG CTCACTCGGG
  S
  TCCGGTTCCC GCACCCCTTC CCTGCCGGCA CCCTCCCCAC CGGGCTCCCT CACCGTCGGC
  CACCCGATCC TTAAGGGTCC CGCGGGGAGC TTCGCGCCAC ATCGCTCTTA CCGGAAGTGC
  CTGGGCAGAC ACTTTTCATA GCTCCCAGAT CCTGAAGCCC CCGGGTCCGC CGGACTTGAG
  GTGGGGGGGT TGGGGGAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403285875	MGP_WTSI_X_35917998	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs214779606					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403285875	MGP_WTSI_X_35917998	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37653698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22681	CpG island 22681	within coordinates
Cul4b	cullin 4B	within coordinates
Gm61874	predicted gene, 61874	within coordinates
Rr8561	regulatory region 8561	within coordinates
Rr394940	regulatory region 394940	1388 bp upstream
Tssr163211	transcription start site region 163211	735 bp upstream
Tssr163212	transcription start site region 163212	676 bp upstream
Tssr163213	transcription start site region 163213	658 bp upstream
Tssr163214	transcription start site region 163214	614 bp upstream
Tssr163215	transcription start site region 163215	487 bp upstream
Tssr163216	transcription start site region 163216	462 bp upstream
Tssr163217	transcription start site region 163217	266 bp upstream
Tssr163218	transcription start site region 163218	150 bp upstream
Tssr163219	transcription start site region 163219	69 bp downstream
Tssr163220	transcription start site region 163220	104 bp downstream
Tssr163221	transcription start site region 163221	132 bp downstream
Tssr163222	transcription start site region 163222	170 bp downstream
Tssr163223	transcription start site region 163223	213 bp downstream
Tssr163224	transcription start site region 163224	1767 bp downstream