rs214782262 SNP Detail

Summary

• ID
  rs214782262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29778315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTCTAT GAAATAGGGA
  ACTTGATGTA TGGAATGCAG AAGAGACAAA AGTTTGGAAA AGCCTCTGTT GGTAATTGTC
  TAGAGAGAAC TGCTGGACAG AGTGGAGACA ATGATTCGTG GAGATTATAA CACGCACGTG
  TTACTGAAAA TTGAATCTAG GATTTTGCTC AGGTCAGGCA AGGGTTCTAA CTCGGAGTTC
  Y
  TGTCCCCAGC TGTATGCTCT TGCGGAACCT CAGGATGGTA GAGATAGGTA GGACTGAGGG
  ATACAGACTG GCCTTCAACT AACTCATGGC CATCTCCCTC CTTCATTGAG ATTACTGGCA
  TGAAAAAAAG AAGAAGAAGA AGAAAGAAGA AAGAAGAAAG AAGAAAGAAG AAAGAAAGAA
  GGAAGAAGGA AGAAGGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353505606	MGP_WTSI_2_29743823	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214782262					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353505606	MGP_WTSI_2_29743823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29778315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	685 bp proximal
Gm75149	predicted gene, 75149	within coordinates
Odf2	outer dense fiber of sperm tails 2	918 bp upstream
Rr396853	regulatory region 396853	1272 bp upstream
Rr554171	regulatory region 554171	1367 bp distal
Rr554172	regulatory region 554172	1162 bp distal
Rr554173	regulatory region 554173	927 bp proximal
Tssr452	transcription start site region 452	1406 bp upstream
Tssr453	transcription start site region 453	1685 bp upstream
Tssr454	transcription start site region 454	1702 bp upstream
Tssr455	transcription start site region 455	1735 bp upstream
Tssr456	transcription start site region 456	1807 bp upstream
Tssr17034	transcription start site region 17034	896 bp upstream
Tssr17035	transcription start site region 17035	914 bp upstream
Tssr17036	transcription start site region 17036	1439 bp upstream
Tssr17037	transcription start site region 17037	1499 bp upstream
Tssr17038	transcription start site region 17038	1763 bp upstream
Tssr17039	transcription start site region 17039	1793 bp upstream