rs214800146 SNP Detail

Summary

• ID
  rs214800146
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8617698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTCGTT AGGGCAGCCA
  TGTTTATGTA TACTATATCC ATGTATGCAT ATAATATGCA CGAAGCCACG TTTGTGTATG
  GATATCATAT GTTTATGTAT ATTACAAGCC TTTTATTTTG GAAACTTTTG TGTTTAGAAC
  TGAATCATTT CCTTTCTCAT CAGGGTACAG CTAGATGTGA GACAAAGCTA AAATGTCTCC
  S
  TTTAATTTTT AAACTATTGT TCCAAGAAAA TCTATTCAAA AATTATGTCT ATCACACCCC
  ATTGAGTCAA CTAAGACACA GGACTAATAA CGAGAGACAT TTCTGTAGAA AAGATAAAAT
  ATATTATAAT TAAATAAGAG ATAATTATAT AAAAGAGAAT TATTATATAA GCTTAGTTTT
  AATTTAGATT TTTTTGGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463550	CHEV_5_8567698	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214800146					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8617698 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	within coordinates
Rr130297	regulatory region 130297	98 bp distal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	588 bp downstream
Tssr45119	transcription start site region 45119	575 bp downstream