rs214805081 SNP Detail

Summary

• ID
  rs214805081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121303761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTACAGT GAAAAGAAAC
  ACACAACATA GGCCTCTAGC TCACTTTCTT CTTTTTTTTT TTAAAGATTT TATTTATTTA
  TTATATGTAA GTACACTGTA GCCGTCTTCA GACACTCCAG AAGAGGGCAT TAGATTTCGT
  TATGGATGGT TGTGAGCCAC CATGTGGTTG CTGGAATTTG AACTCAGGAC CTTGGGAAGA
  R
  CAGTCGGTGC TCTTAACCAC TGAGCCATCT CGCCAGCCCC ACTTTCTTCT TATATTTTGA
  TTTTTGTTAC TGTTCTGCCT GTGAGCCTGG CCTTTAACGG TTGAGCCATC TATGCAGCAT
  TATTATTATC ATCATTTGTA AGGATGCTAT GTGTGGATAT GTGCACAAGC GTAGGTACTG
  GCAGAAGCCA GAGGTGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ
ss355466987	MGP_WTSI_2_121299016	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SPRET/EiJ
rs214805081					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355466987	MGP_WTSI_2_121299016	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121303761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12161	CpG island 12161	673 bp proximal
Gm75774	predicted gene, 75774	809 bp upstream
Mfap1b	microfibrillar-associated protein 1B	within coordinates
Rr563831	regulatory region 563831	195 bp distal
Rr563832	regulatory region 563832	67 bp distal
Rr563833	regulatory region 563833	777 bp proximal
Rr563834	regulatory region 563834	820 bp proximal
Tssr25938	transcription start site region 25938	713 bp downstream
Tssr25939	transcription start site region 25939	761 bp downstream