rs214807083 SNP Detail

Summary

• ID
  rs214807083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129208048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGCATTT AGTCTAGGCT
  CTGCCCCTCA GGTACTTGGC AACAGCCAGG TGTGCCTGAC TTACTATAAA AGAGGCTGCT
  TGACCCCTCC TCACTTTCTC TCCCAATTCC TCTCCCCGTT CTCTCTCCCT GCATACTCAT
  GGCTGGCCTC TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTGCCTTT
  Y
  TTTCAACTCC CCTCCCCATG CCCTAAATAA ACTCTATTCT ATACTATACT GTCGTCCTGT
  GGCTGGTACC GCAGAGGGGG AAGGTCCCTC AGAGGCACCC CCTTCCCCAA CACCTTACCT
  CACCTCCATT GAACATATCC CTGCCTTTTC CTATCTTTTT ATAAAACACA ACTGGTGTCA
  TACCCAGAGT GTTGTGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370046235	MGP_WTSI_6_129181103	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214807083					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370046235	MGP_WTSI_6_129181103	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129208048 () rs orientation: forward

Symbol	Name	Function Class
2310001H17Rik	RIKEN cDNA 2310001H17 gene	1538 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Gm68221	predicted gene, 68221	1986 bp upstream
Rr399972	regulatory region 399972	1458 bp downstream
Rr399973	regulatory region 399973	1821 bp upstream
Tssr59119	transcription start site region 59119	1702 bp downstream
Tssr59120	transcription start site region 59120	1670 bp downstream
Tssr59121	transcription start site region 59121	572 bp downstream
Tssr59122	transcription start site region 59122	538 bp downstream
Tssr59123	transcription start site region 59123	487 bp downstream
Tssr59124	transcription start site region 59124	1973 bp upstream
Tssr63549	transcription start site region 63549	1966 bp upstream
Tssr63550	transcription start site region 63550	1840 bp upstream
Tssr63551	transcription start site region 63551	792 bp upstream
Tssr63552	transcription start site region 63552	1812 bp downstream
Tssr63553	transcription start site region 63553	1848 bp downstream
Tssr63554	transcription start site region 63554	1872 bp downstream