rs214828704 SNP Detail

Summary

• ID
  rs214828704
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84354935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCAGAA GTAGGAAACA
  ACTTTGGGAA GGAGATGCCC AGTGAGACGC AATACCTCCC CTACATGCAC GCAAGCACTT
  CTATACGCAA ACCCCGCTCT TCACGCTCAT CAAATGGATG TAGGAAAGCA AGAAAGCCCA
  GGTTCATCAT GATGGTGGAG AAGACCTATC TTAAGACATA AATCCTCTAA AGATTTTCCA
  T
  CGTCAAAGAC ATGTGCTACA AACATAGCTA TAATTAAAGC ACATGTAGAT CTATCCAAGA
  CATTTTTTTT TTCGTTTTCC ACACTTATCT CAAACAAGCA GCCCATTGCA GCAACAAAAT
  CTTCCTATAT TGCTCCCTAG TGTCACATTT TATTTCCTCA GACATTCTTT TGAAAACATG
  CTCTAATGTC TTTCTTGCCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325260813	CHEV_16_84558292	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214828704					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84354935 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	235 bp upstream
Rr404934	regulatory region 404934	1610 bp upstream
Rr518505	regulatory region 518505	206 bp proximal
Rr518506	regulatory region 518506	307 bp proximal
Rr518507	regulatory region 518507	1598 bp proximal
Rr518508	regulatory region 518508	1729 bp proximal
Tssr139145	transcription start site region 139145	879 bp downstream