rs214838078 SNP Detail

Summary

• ID
  rs214838078
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70109815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATAGTTGG TTCAGGTTTC TTAGTCAGCC
  AAGTGGAAAT TTCAGTGTGA AGTGATGAAA ATTTAGAGTT ATGAAAGTAA AAAATGAAGT
  TACAGAATTG GGTGTCTACT AGGTACTTTA TTTCTGGGTT CAAGCCCCCC CCCATTTGTA
  K
  ATATATATAT ACCTTTATCT AAGACCTTTA GCTATTCACA TCGAAGTGAA TATTTTTCTT
  TCTTAAGTTC ATCACAAACC CTGTTTTAAA TGTTTATATC CCAAGGCTGG TCAATACTGT
  TCCTTCTTCC TAGACGCTAA GATTTtacta                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325235738	CHEV_16_70313172	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214838078					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70109815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	909 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	1022 bp upstream
Rr517848	regulatory region 517848	532 bp proximal
Tssr138939	transcription start site region 138939	1040 bp upstream
Tssr138940	transcription start site region 138940	1071 bp upstream
Tssr138941	transcription start site region 138941	1084 bp upstream
Tssr138942	transcription start site region 138942	1130 bp upstream
Tssr138943	transcription start site region 138943	1164 bp upstream
Tssr138944	transcription start site region 138944	1192 bp upstream
Tssr138945	transcription start site region 138945	1550 bp upstream
Tssr138946	transcription start site region 138946	1740 bp upstream