rs214841043 SNP Detail

Summary

• ID
  rs214841043
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87844624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGACGAGA AAATAATAGA CACATGATAA
  GTATTTCATG GTAAAGAGAT GGTAAGTATT TCATGTGATA CTCTCAGGTA AATTTAAGAT
  TTCATTGTAT CCTGTTGATT CTTATTTATG TAAATGACAA CTTTAATAAC CAAATATGTC
  S
  TTCTGCAAGC CAGCCTAGCT ACTATAGAAT AGGCATGTCA TTTCTAGTAG TCTTTAGTTG
  GTACTATAGT TCCTAGGCAA TGAGTGTCAA AAGGCACACA GTGAATATTA ATAATCCAGG
  TCAGATTAGG GAGAGCTCAT GGCAGTGAAT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321599814	CHEV_5_88125790	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214841043					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87844624 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
Tssr46891	transcription start site region 46891	2000 bp downstream
Tssr46892	transcription start site region 46892	1971 bp downstream
Tssr46893	transcription start site region 46893	1945 bp downstream
Tssr46894	transcription start site region 46894	1900 bp downstream
Tssr46895	transcription start site region 46895	1880 bp downstream
Tssr46896	transcription start site region 46896	1801 bp downstream
Tssr51628	transcription start site region 51628	1935 bp upstream
Tssr51629	transcription start site region 51629	1841 bp upstream
Tssr51630	transcription start site region 51630	1793 bp upstream
Tssr51631	transcription start site region 51631	1754 bp upstream
Tssr51632	transcription start site region 51632	1495 bp upstream
Tssr51633	transcription start site region 51633	691 bp upstream
Tssr51634	transcription start site region 51634	586 bp upstream
Tssr51635	transcription start site region 51635	374 bp downstream
Tssr51636	transcription start site region 51636	400 bp downstream
Tssr51637	transcription start site region 51637	513 bp downstream
Tssr51638	transcription start site region 51638	1289 bp downstream
Tssr51639	transcription start site region 51639	1296 bp downstream