rs214841120 SNP Detail

Summary

• ID
  rs214841120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24851411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGCAGA GACCCTGGGG
  TTTGCTGGCC ATCAGTCCAG TCCACTCAGC AAGCTCTAGA TCTAATGACA CATACTGTCT
  TCTTAAATAA GATGGAAATC AACTGAGGAA CAAATCCACA CACGTGCACA CACTATCTAT
  AAAGATAGTG TGAAGATAAA GACTATGTGT GTGTGTATAC TGTATCATAT ATATTATATT
  R
  TGTTATACAA TTATGTTAAA TAATTATATA ATTTAATATA TACAATGTTA TATATAACAT
  ATTATGCATA TTATATATAA TGTTATCATA ATGTGTAATT GTATATTATA TATAATTTAC
  TTATATATTT TATTATATCA TATATAATAT ATCATATATT ACATAATATA ACACAATATA
  TCATACTATA TATAATACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321496139	CHEV_5_24152231	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214841120					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24851411 () rs orientation: forward

Symbol	Name	Function Class
1700022A21Rik	RIKEN cDNA 1700022A21 gene	1271 bp upstream
Tssr45438	transcription start site region 45438	950 bp downstream
Tssr45439	transcription start site region 45439	943 bp downstream
Tssr45440	transcription start site region 45440	930 bp downstream
Tssr45441	transcription start site region 45441	913 bp downstream
Tssr45442	transcription start site region 45442	907 bp downstream