rs214841835 SNP Detail

Summary

• ID
  rs214841835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCTTTC ATTTTTAAGC
  TTCCTGAGTC TGAAATAAGT TTTCTCGGCT TGTACCTCGA ACCCAACAGT AAGAATCCAG
  CCCAGTTCCA GCGGCAGAAA AAGCAAAGTC AAGGCAGTGG CTCTGATGTA TTCCTCTACC
  ACCAGGCTCC CGAGGACATG GCCAAACTCA TTTCTGCACC AGGGCAAATG GGGAGGGATG
  Y
  CAGCCTTGCT GGCATCTAGC TGATGAACAA AGTAGTCTCT GCTTCAATAC TGATTTGGTC
  CGCTGAGACC AGAGGATCAC TCGTCCTGAA CTCTGCTCCC TTCACGCTGA TGAAGCCCCA
  CGCTTCTGCT CTGAGGTCCC TCTTAGCTGC TGGGCTGAGC CTGCTTTTGG GCTTCAACCC
  TGGGAGGATA GCAGGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104746	CHEV_12_77355184	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214841835					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	690 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1101 bp upstream
Rr403350	regulatory region 403350	848 bp upstream
Tssr113934	transcription start site region 113934	1012 bp upstream
Tssr113935	transcription start site region 113935	1047 bp upstream
Tssr113936	transcription start site region 113936	1093 bp upstream
Tssr113937	transcription start site region 113937	1135 bp upstream
Tssr113938	transcription start site region 113938	1151 bp upstream
Tssr113939	transcription start site region 113939	1174 bp upstream
Tssr113940	transcription start site region 113940	1256 bp upstream
Tssr113941	transcription start site region 113941	1286 bp upstream
Tssr116711	transcription start site region 116711	849 bp downstream
Tssr116712	transcription start site region 116712	875 bp downstream