rs214852377 SNP Detail

Summary

• ID
  rs214852377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123279844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTCCAGG CGAGGGTTGT
  ATCCTCCCAG GAATGTGAAG GCTAGTGTGG TTCCAAACCT TGGTTTCCCT TCCCCAGCAC
  AGCTCCTGGG AGGGAGGGGG CGTGCGGGCC AAAGAGGAAG CGGGATCGGA GATACCTCGA
  TTGCAAACTC GTTTGGGGTC GACGTCTGCC TCCCCTCCAG GCTTCTAGTA GTCATACACA
  Y
  GATCACCCCC CACTCGAAAC CCAGCCCTTT TCGCCGAGAC TCCACGCGTC CACCACCGGC
  CTGGGCAGTT TGGAAACAGT TTGGGAGGCC CTGGGGGCGC ACACCGTGGA GTCTTCCGTA
  GCTGGAAGGG TAGCCCCAGC CGCGGGGGAG ATAGAAGCCG TGGAGACCCC CCTCTCCCCC
  GTCAGCCAAG CCCCCCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366533359	MGP_WTSI_5_123591790	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214852377					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366533359	MGP_WTSI_5_123591790	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123279844 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16577	CpG island 16577	within coordinates
Gm38102	predicted gene, 38102	within coordinates
Rr367945	regulatory region 367945	81 bp downstream
Rr378574	regulatory region 378574	1174 bp downstream
Rr399342	regulatory region 399342	256 bp downstream
Rr620116	regulatory region 620116	1019 bp distal
Rr620117	regulatory region 620117	within coordinates
Setd1b	SET domain containing 1B	412 bp upstream
Tssr48764	transcription start site region 48764	541 bp downstream
Tssr48765	transcription start site region 48765	345 bp downstream
Tssr48766	transcription start site region 48766	329 bp upstream
Tssr48767	transcription start site region 48767	406 bp upstream
Tssr48768	transcription start site region 48768	449 bp upstream
Tssr53210	transcription start site region 53210	1801 bp upstream
Tssr53211	transcription start site region 53211	1656 bp upstream
Tssr53212	transcription start site region 53212	1632 bp upstream
Tssr53213	transcription start site region 53213	1050 bp upstream
Tssr53214	transcription start site region 53214	687 bp upstream
Tssr53215	transcription start site region 53215	448 bp upstream
Tssr53216	transcription start site region 53216	419 bp upstream