rs214858053 SNP Detail

Summary

• ID
  rs214858053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115517214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCAGGC CTCCTGGCTC
  GTTGTCCACA GACACCGAGA AGCTAGCAAG TCTGCCTGCA AACCCAGACG GAAACTGCAC
  CGTTCAAGCC AAACACAAGG TGGGAGAGGC TGTTGTGTCC GGATTTCTAG AAATGAGCAC
  TTCTGCATTG CTGGATACGG GTCCAGAAGA CTGGGTTTTG ACTCCTAGGG AGACTGAGGT
  R
  GAAGGACCAC AGTGTGAGGG CCAGCCTGGA CTACACAGCT CAACTCAGTC TTAAAGGCTA
  GAAGGAAATC TGTGACTCAC ACCTGTAACC TAGAACCCTG GAGGCAAGGG CAAGAGGACT
  GGGAGCCAGC CTGGGCTATA TAAGACCTCA AGAAATTCAG AAATTCAGAC AAAAGGCAAA
  ATGCTAGCCA AACATGTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384832899	MGP_WTSI_11_115487702	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214858053					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384832899	MGP_WTSI_11_115487702	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115517214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	1325 bp proximal
Rr369445	regulatory region 369445	1214 bp upstream
Rr459966	regulatory region 459966	111 bp distal
Rr459967	regulatory region 459967	1201 bp proximal
Rr459968	regulatory region 459968	1747 bp proximal
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr111780	transcription start site region 111780	1314 bp downstream
Tssr111781	transcription start site region 111781	1339 bp downstream
Tssr111782	transcription start site region 111782	1355 bp downstream
Tssr111783	transcription start site region 111783	1373 bp downstream
Tssr111784	transcription start site region 111784	1705 bp downstream
Tssr111785	transcription start site region 111785	1737 bp downstream
Tssr111786	transcription start site region 111786	1845 bp downstream
Tssr111787	transcription start site region 111787	1872 bp downstream