rs214867189 SNP Detail

Summary

• ID
  rs214867189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106340984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGGACA GTTTCTGGCC
  CAGGGTTCTA GGAGTATGGC AGCCCCAGGG CAGGGGCCCC ACCTCTACAG ACCTATGCTT
  GGATGCAGAG AATGGCCAGG GGCTCTCTGG AGCCCTGCTG TGGGAGGGGT TACTCATGTC
  CCCTCCATCC CTTTGGGCTT CATCCTGCTG TCCCAGTGGG AATTGGAGGA GAGTGAGGGG
  Y
  GGCCAGGGCC AAGCTTCTCC TCATCCCCTG TAGATCCTGC TGCTTCTACT GATACCCTTT
  TGACTGGAAT AGACTGGCTG GGCTTGTCCG GGGGAGGGCA ACCCAAAGAG AGGGCTCTGC
  CTGCCTGTAG GTGTGGCCTG GGGGGCAGGG GCCCAGTCTC AGCAGCAGAC ACTCTGTACA
  GTTTTTTCAA TCCCTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378830311	MGP_WTSI_9_106366116	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214867189					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378830311	MGP_WTSI_9_106366116	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106340984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	1139 bp distal
Cpgi22268	CpG island 22268	701 bp proximal
Gpr62	G protein-coupled receptor 62	177 bp downstream
Pcbp4	poly(rC) binding protein 4	within coordinates
Rr686360	regulatory region 686360	1327 bp proximal
Tssr86914	transcription start site region 86914	1890 bp downstream
Tssr86915	transcription start site region 86915	581 bp downstream
Tssr86916	transcription start site region 86916	513 bp downstream
Tssr86917	transcription start site region 86917	373 bp downstream
Tssr86918	transcription start site region 86918	234 bp downstream
Tssr86919	transcription start site region 86919	within coordinates
Tssr91318	transcription start site region 91318	1100 bp downstream
Tssr91319	transcription start site region 91319	1117 bp downstream
Tssr91320	transcription start site region 91320	1502 bp downstream