rs214875660 SNP Detail

Summary

• ID
  rs214875660
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24030227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAAATCAA AGGACAAGAA
  GAGGAAACGG TAAGTGTGTT TGGGGGAAGT AGAAAAATGC TTCCCTTGGG GAAGGATTAA
  AAATAATTGT GCCAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGGGA GAGAGGGAGA GAGGGAGAGA GAGGGAGGAG GTAGAGGCCA GCCTGGTCTA
  C
  CTCTGGTTCA GGAAGTGAAG GCCCTTTTTA TCAAACCTAA AGACCAGAGT TTTATCACTG
  GAACTTAACG TATTGGAAGG GGAGAGTGAA CTCCTATAAC TTGTCTTCTG ACTTCCTTTT
  ACATACTTAA TAAACTAAAT GTAATTTTAA AAATTTTTTT AATATTTTTT GACAGAGGGT
  CTTTTTATGT AGTTCAATTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	PL/J
ss397842679	MGP_WTSI_17_23948220	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	PL/J
rs214875660					SNP	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397842679	MGP_WTSI_17_23948220	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24030227 () rs orientation: forward

Symbol	Name	Function Class
Gm49911	predicted gene, 49911	1961 bp downstream
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142962	transcription start site region 142962	1111 bp upstream
Tssr142963	transcription start site region 142963	1247 bp upstream
Tssr146669	transcription start site region 146669	1200 bp upstream