rs214879154 SNP Detail

Summary

• ID
  rs214879154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGACCCA GCCAACCTAG
  AGGCAGTAAG AGGCTGGGTG TGGTTGTGTA TGCCTAGAAT CCAGCATTTG GGAGGTGGAG
  GCAGGAGGAT CAGGGGTTCA AGGCCAGACT CATCTACATG AGACCATCTC AGAAAAACAA
  AATAATATTA AATTGAATAA AAGTGGAAGG AGAGATGATG CTGGGCTTGA CATCCAGCCT
  Y
  CTGGAGGGCA GCATTGTTAT GGATAGTGAC CTTCCTGAGA GCAGTATTAC TGGTAGAGGA
  AATGTGTGTC CGGTGTGGGG CCAAGTGTTT CATCTCTTCG TTATTTATGT TTCATCTCTT
  CGTTATTTAA CAACCGCTCA TTCCAAGCCC TAACCTGGTC CACACGCAGA AGTGTCTTGT
  TCCTGGCCCC AGAGTTAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400867876	MGP_WTSI_18_60965813	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214879154					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400867876	MGP_WTSI_18_60965813	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939231 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1918 bp distal
Rr405670	regulatory region 405670	1000 bp downstream
Rr405671	regulatory region 405671	202 bp downstream
Rr405672	regulatory region 405672	353 bp upstream
Tssr5344	transcription start site region 5344	1512 bp upstream
Tssr151328	transcription start site region 151328	1142 bp downstream
Tssr151329	transcription start site region 151329	1071 bp downstream
Tssr151330	transcription start site region 151330	191 bp downstream
Tssr151331	transcription start site region 151331	172 bp downstream
Tssr151332	transcription start site region 151332	838 bp upstream
Tssr151333	transcription start site region 151333	1376 bp upstream
Tssr151334	transcription start site region 151334	1740 bp upstream
Tssr151335	transcription start site region 151335	1749 bp upstream
Tssr151336	transcription start site region 151336	1783 bp upstream
Tssr151337	transcription start site region 151337	1837 bp upstream
Tssr151338	transcription start site region 151338	1893 bp upstream
Tssr153493	transcription start site region 153493	1896 bp downstream
Tssr153494	transcription start site region 153494	1918 bp downstream