rs214885138 SNP Detail

Summary

• ID
  rs214885138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26838659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGAGGCC CTGGGGTGGT ACATCTGAAG
  ATGATAAGAA AAGACAGTGA CACTTGCATC ACAAGTCTCC CTAGGGGATG CCCTGCTTTC
  CAGGGATCTC TGTCCTCTCC AGACAGTGTT AGCACAGTAG GAAAGGCAAA ACACGAGTGC
  Y
  CGGTAGGTAG CATCCTCCTC TTACTCTCCT AGGCTGTGTG ATCTCAGCCA GTTATTTGTT
  CTGCTCGCTG AAGACACAGT GATCCTGCCC AGCACTGCTT GGCCACGTTA CAGGAGCTGC
  CACATGCAAA AGCCCGGCAT CTTCCAGCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325342562	CHEV_17_26756630	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214885138					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26838659 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	673 bp downstream
Rr523901	regulatory region 523901	698 bp distal
Rr523902	regulatory region 523902	744 bp proximal
Rr523903	regulatory region 523903	1274 bp proximal
Rr523904	regulatory region 523904	1775 bp proximal
Tssr143257	transcription start site region 143257	1827 bp upstream