rs214890679 SNP Detail

Summary

• ID
  rs214890679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4337833 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGCAC CGGCGACAGG TAAGCGCGCA
  Y
  CGCCACCGCG TCCCGGGGCC CACGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323240440	CHEV_10_5958708	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214890679					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4337833 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1265	CpG island 1265	within coordinates
Rr224739	regulatory region 224739	within coordinates
Rr368917	regulatory region 368917	438 bp upstream
Tssr92255	transcription start site region 92255	658 bp downstream
Tssr92256	transcription start site region 92256	628 bp downstream
Tssr92257	transcription start site region 92257	282 bp downstream
Tssr96505	transcription start site region 96505	838 bp upstream
Tssr96506	transcription start site region 96506	354 bp upstream
Tssr96507	transcription start site region 96507	139 bp downstream
Tssr96508	transcription start site region 96508	204 bp downstream
Zbtb2	zinc finger and BTB domain containing 2	within coordinates