rs214893116 SNP Detail

Summary

• ID
  rs214893116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40479158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTACTT ATAGTTGGAT
  TGAGTCTGTG ATCTTGTCCC AGGGGTCAGA GACTCCATGA CAATGGATGG TGCAGTGTAC
  TAGTTCCTGA CGAGTGTTCA GGGTTGACTT AACTCGAGCC TGGCTTCTAT AGATTCTGGC
  ATCTAGAAAA AGATGCAAGA CTCCCCCACC CCCGCTCCCG CCCCCACCCC CAGACCCCAT
  Y
  CCCTTTGCCA TAGTTCCCAG GGCAGAGTTT GCAAGGGAAG TAATGCAAGC AGGAGCTGGC
  TCTTCCTCTC CGCCAGATGC TTCTCAGTGG TTTGTGAATG AATGAATGAA TGGAGATTAA
  GCTCCAATGA TGCTAAAGTG AACTCCCAGC CTAACACAGG CACCTAAAGA CCTCAGCAAA
  CACATTAACG TCTAATGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J
ss380125436	MGP_WTSI_10_40322968	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J
rs214893116					SNP	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380125436	MGP_WTSI_10_40322968	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40479158 () rs orientation: forward

Symbol	Name	Function Class
Rr214672	regulatory region 214672	1843 bp proximal
Rr222650	regulatory region 222650	1724 bp proximal
Slc22a16	solute carrier family 22 (organic cation transporter), member 16	within coordinates