rs214904202 SNP Detail

Summary

• ID
  rs214904202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129205791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGACTGT CCTGGAACTC
  ACTTTGTAGA CCAGACTGGC CTCAAACTCA GAGATCCGCC TGCCTCTGCC TCTGCCTCTG
  CCTCTGCCTC TGCCTCTGCC TCTGCCTCTG CCTCTGCCTC TGCCTCTGCC TCTGCCTCTG
  CCTCTGCCTT CCAAGTGCTG GGATTAAAGG TGTGTGCCAC CATGCTGCAG GGCAGAAGTC
  R
  ACATTTCTCA TGCTGAGTTC AACCACCACC TCATTAATTC CATTGATAAA TGGCCATCTA
  CACTTCAGAA GAATCCAAAT GAAGGCATGG TATTTATCAC TGTCTTCTGC TTGACTTGAT
  CTTCTGTAGC AGGTTTGCAT AGCACCTGAT ACTTAGTTCT AGGTGCCATT GTTTAAGCCC
  CCCTCCCCCA TGTTGGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321948747	CHEV_6_129178846	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214904202					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129205791 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	1065 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	499 bp upstream
Tssr59119	transcription start site region 59119	548 bp upstream
Tssr59120	transcription start site region 59120	567 bp upstream
Tssr59121	transcription start site region 59121	1674 bp upstream
Tssr59122	transcription start site region 59122	1708 bp upstream
Tssr59123	transcription start site region 59123	1767 bp upstream
Tssr63549	transcription start site region 63549	259 bp downstream
Tssr63550	transcription start site region 63550	409 bp downstream
Tssr63551	transcription start site region 63551	1434 bp downstream