rs214915113 SNP Detail

Summary

• ID
  rs214915113
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97795073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCTTCC ACTCTGAGGT
  CAAAACTCTT CTAATCCAAA CCCCGATCCC ATTCATAGGA AACTGAGGCC TAGAAAAGTC
  CCAGTTAGTT AAAGGCAAAG TAAAGACTTG AACCCACCAT TGCCTTTCGA TTTGAATGAT
  AAGTACTGGC ATTCCACGGG GGGGGGGGGG GGGGGGGGGC AGGGAGGGGG GTACAGAGGG
  M
  GGAGCTAAAA ATTCTATGTC AAAGACGTGC TTACTTTAAA AATGGCAGCC ATACAATCTG
  TCTCTTCTTT TGGAAATATT AATATGACAG ATTTTCATCT TGCTGTTGCT ACATGACGAA
  CACGGGACCT AATCTGCCGG GTGTTTTCTA GGCCAGAGTG GAGGAAGGGT CTGGGTTCAG
  GTGGAGCTAG CGGCCCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss358949077	MGP_WTSI_3_97691680	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	C	A	A	C	C	C	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs214915113					SNP	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	C	A	A	C	C	C	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358949077	MGP_WTSI_3_97691680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97795073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	418 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	Intron
Rr581573	regulatory region 581573	940 bp proximal
Tssr34685	transcription start site region 34685	871 bp downstream
Tssr34686	transcription start site region 34686	929 bp downstream
Tssr34687	transcription start site region 34687	1070 bp downstream
Tssr34688	transcription start site region 34688	1154 bp downstream