rs214927164 SNP Detail

Summary

• ID
  rs214927164
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29299648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAATT TATTTATTTA
  TTTTTATGTG TATGGTGTTC TATCTGCATG TACACTTGCA TGTCAGAAGA GCATCAGAAC
  GCATTATAAA TGGTTGACAG CCACTATGTG GTTGCTGGGA ATTGAACTTA GGACCCCTGG
  AAGAGCAGTC AGTGCTCTTA ACCACTGAGC TGTCTCTCCA GCCTGAGATT TTTTTTTTTT
  W
  AATTGTAGAT ATGAGGGAGA GAGCCGGCAT TTCGAAGAGT CCAGAGCAGA GGGAGGGAGG
  AAGGGAAAAG GAGAGGGAGG GGGAGGGAAG AGGGAGGGGG AGAAGTGGGA GAGGGAGGAG
  AAGGAGAGAG GATGGCTAGC GGACTAGATC TGGTCAGAGA GAAGCAGAAG GGGGCAGGAC
  ATAGATGGAG AGCGAGAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352861	CHEV_17_29217619	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214927164					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29299648 () rs orientation: forward

Symbol	Name	Function Class
Rr370203	regulatory region 370203	1326 bp upstream
Rr392491	regulatory region 392491	739 bp downstream
Rr524787	regulatory region 524787	1694 bp distal
Rr524788	regulatory region 524788	1133 bp distal
Rr524789	regulatory region 524789	within coordinates
Trp53cor1	tumor protein p53 pathway corepressor 1	1548 bp upstream
Tssr143493	transcription start site region 143493	902 bp upstream
Tssr147171	transcription start site region 147171	1833 bp upstream
Tssr147172	transcription start site region 147172	1730 bp upstream
Tssr147173	transcription start site region 147173	1702 bp upstream
Tssr147174	transcription start site region 147174	1680 bp upstream
Tssr147175	transcription start site region 147175	1633 bp upstream
Tssr147176	transcription start site region 147176	1599 bp upstream
Tssr147177	transcription start site region 147177	1541 bp upstream
Tssr147178	transcription start site region 147178	148 bp downstream