rs214933380 SNP Detail

Summary

• ID
  rs214933380
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29981324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTCCCAGC AACCACGTGG TGGCCCACAA CCATCTGTAA
  TGGGATCAGA TGCCCTCTTC TGGTGTCTGA AGACAGTAAT AGTGTACTCA TATATATATT
  A
  AAAAAAAAAA AAAAAGACAT AACAGTTCAG GCTGACCTCT ATTTTGATGG GTCCTGAGTG
  AAGACTGCAG TTGGGGAATT TCTAAGAAGG AGGAGGAGA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss370903439	MGP_WTSI_7_31066918	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs214933380					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370903439	MGP_WTSI_7_31066918	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29981324 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	within coordinates
Cpgi18786	CpG island 18786	879 bp distal
Rr400235	regulatory region 400235	1332 bp downstream
Rr644765	regulatory region 644765	1790 bp distal
Rr644766	regulatory region 644766	1835 bp distal
Rr644767	regulatory region 644767	1002 bp distal
Rr644768	regulatory region 644768	477 bp distal
Rr644769	regulatory region 644769	33 bp distal
Rr644770	regulatory region 644770	337 bp proximal
Tssr65667	transcription start site region 65667	1757 bp downstream
Tssr65668	transcription start site region 65668	1711 bp downstream
Tssr65669	transcription start site region 65669	1315 bp downstream
Tssr71721	transcription start site region 71721	1475 bp upstream
Wdr62	WD repeat domain 62	1480 bp upstream