rs214938708 SNP Detail

Summary

• ID
  rs214938708
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATTATA TTCCCTTATT
  TTAATTTTCT ATTAGGGAAT TAGAAAGGGC ATAAACTGCT TTATCCAGTG TTATATTAAA
  AGCTTAATGT ATATAATCTT TTAGAGGTAA AATCTACAGC CAGCAAAAGT CATGGTAAAT
  ATTCTTTGAC TGAACTCTCA CTAAACTCCT CTAAATTATA TGTCATATTA ACTGGTTAAA
  W
  TAATATAAAT TTGTGACATG ACCTTAACTG GTTAGGTAGG ATATTTTTCT TCATGCAAAA
  ATATGACTAA TAATAATTTA GCACAAAAAT ATTTCCCAAT ACTTTAATTC TGTGATAGAA
  AAATGTTTAA CTCAGCTACT ATAATCCCAT AATTTTGAAA ACTATTTATT AGCTTTTGTG
  TTTGACCCTT CCCTAGCCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815789	CHEV_6_70675325	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214938708					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702315 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1115 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1104 bp upstream
Igkj4	immunoglobulin kappa joining 4	1746 bp downstream
Igkj5	immunoglobulin kappa joining 5	1408 bp downstream
Rr158	regulatory region 158	620 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	within coordinates
Rr399685	regulatory region 399685	216 bp upstream
Rr399686	regulatory region 399686	1180 bp upstream
Tssr1880	transcription start site region 1880	1519 bp upstream
Tssr56953	transcription start site region 56953	1784 bp downstream
Tssr56954	transcription start site region 56954	1652 bp downstream
Tssr56955	transcription start site region 56955	1431 bp downstream
Tssr56956	transcription start site region 56956	477 bp upstream
Tssr56957	transcription start site region 56957	1099 bp upstream
Tssr56958	transcription start site region 56958	1146 bp upstream
Tssr56959	transcription start site region 56959	1164 bp upstream
Tssr56960	transcription start site region 56960	1187 bp upstream
Tssr56961	transcription start site region 56961	1201 bp upstream
Tssr56962	transcription start site region 56962	1209 bp upstream
Tssr56963	transcription start site region 56963	1258 bp upstream
Tssr56964	transcription start site region 56964	1273 bp upstream
Tssr56965	transcription start site region 56965	1279 bp upstream
Tssr56966	transcription start site region 56966	1290 bp upstream
Tssr56967	transcription start site region 56967	1305 bp upstream
Tssr56968	transcription start site region 56968	1329 bp upstream
Tssr56969	transcription start site region 56969	1365 bp upstream
Tssr56970	transcription start site region 56970	1378 bp upstream
Tssr56971	transcription start site region 56971	1398 bp upstream
Tssr56972	transcription start site region 56972	1424 bp upstream
Tssr56973	transcription start site region 56973	1462 bp upstream
Tssr56974	transcription start site region 56974	1494 bp upstream
Tssr56975	transcription start site region 56975	1527 bp upstream
Tssr61321	transcription start site region 61321	1151 bp downstream
Tssr61322	transcription start site region 61322	1316 bp downstream
Tssr61323	transcription start site region 61323	1331 bp downstream
Tssr61324	transcription start site region 61324	1421 bp downstream
Tssr61325	transcription start site region 61325	1487 bp downstream
Tssr61326	transcription start site region 61326	1522 bp downstream
Tssr61327	transcription start site region 61327	1536 bp downstream
Tssr61328	transcription start site region 61328	1627 bp downstream