rs214941270 SNP Detail

Summary

• ID
  rs214941270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101901506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGTCTG ATGGAATATA
  GAACTATTCG ATCTGAAGCA TCCAGTGGAG GAGTTAAAAA TCCTAGGACT AAGTTTCAGA
  AGACCCTGAA CTCTGGACTC TGCCAGTCAG ACTAGAACAA TCTTAGGCCA CGACCTTACC
  CATTTCTGAG TCTCAGCTTC CCCCACTGGA AAACAAGGGG TTGGAGCAGA TGATACCCTT
  Y
  GGCTCTGACC TTCTGTGATG CACTCTTGAG AATAATAATT AAGTAATTGA AGTTTATGCA
  TGTAGCATAT TGCTCATAGT TCCTTAATAT CACTTAGGTC ATCCTGTTTT GAGATCTAGT
  AAATTGTATC TGTGTCTAAT GTCTGTCTCC TCTACCAACT GCTAAGTCCT TTGAGGTTGA
  ATCTGATTCA TCTCTGTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353681	CHEV_7_109400813	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214941270					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101901506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	1315 bp distal
Rr652563	regulatory region 652563	1686 bp distal
Rr652564	regulatory region 652564	1357 bp distal
Tssr73946	transcription start site region 73946	1965 bp upstream
Tssr73947	transcription start site region 73947	1820 bp upstream
Tssr73948	transcription start site region 73948	1784 bp upstream
Tssr73949	transcription start site region 73949	1751 bp upstream
Tssr73950	transcription start site region 73950	1704 bp upstream