rs214942628 SNP Detail

Summary

• ID
  rs214942628
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGAGCC CCTACTTTCT
  GAGAAAACTT TCACCTCTAC CTGGGGAGGC TACCTTCCTA TTGTAAAGCA GATACACAAC
  ATTTGAATTC CTCCAAAGGT GGCCCTTCAC TCTCAGCTTC TCTCCTTTCT ACCTCTCTCC
  TTCCCTCCCG TCCCCTTCTC TCTCCTCACC TCTCCCTTCT CTTCTTTCCG CTCCCCCCTG
  S
  CCCCCACCTC CCTAGAGATT ACTAAAGCAG AAGTACCGTT CTGCGAACTT CCAGGAGAAT
  TTCAACATTT AGAAGCCAAC TCCTGCTTAG ATCTCACCTG CTACACTAGG GGATTGGAGA
  TCCAGAGATA CTAATTCTAC TGGGTGATGG TAGCTGCTTT GGAAAGAAAT GAGAGAAATA
  ACCGTGTTTG CAGAGTGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137469	CHEV_9_99778311	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214942628					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	1422 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	1168 bp downstream
Rr685464	regulatory region 685464	1733 bp distal
Rr685465	regulatory region 685465	1232 bp distal
Rr685466	regulatory region 685466	within coordinates
Sox14	SRY (sex determining region Y)-box 14	1722 bp upstream
Tssr91083	transcription start site region 91083	1699 bp upstream
Tssr91084	transcription start site region 91084	1680 bp upstream