rs214950169 SNP Detail

Summary

• ID
  rs214950169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23925422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCACATT TGTGGAACTA
  GCAGTTTTCT TATGTAAAAA CAAACATGTT ATCTATCTAT AGATCTTTGA ATTTTCTCCA
  AATATGTTCC AATATTTTTA ACCCTAGAAG CATCTTTATG TTGTTCGCAA TAATAATTTA
  TGAAATTTTA TTTCTGTAGG AACAAAGAAA GTGGACATTA AAACCACTTA GTTATTGAAG
  Y
  CATCGCTGCA CAAATGAATT AAGAATTTTA GACCAGGTCT GTTCATTGAT ACATAAGGTG
  AGAACAGATC CATGCACATA TGTAACTTTA AAATCGAAAA GCAGTATTCA TAGGGAAAAT
  CCATTTTAAA TCTATTTAAA ATCCATTTTA AATAACATAC ATCTCAGTCC AGAATGTATG
  TTATTTCTAA TGTTCTACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387989056	MGP_WTSI_13_23833308	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214950169					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387989056	MGP_WTSI_13_23833308	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23925422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	1377 bp distal
Gm60901	predicted gene, 60901	862 bp upstream
H1f2	H1.2 linker histone, cluster member	1908 bp downstream
Rr369656	regulatory region 369656	901 bp downstream
Rr388130	regulatory region 388130	217 bp upstream
Rr475932	regulatory region 475932	372 bp proximal
Rr475933	regulatory region 475933	873 bp proximal
Rr475934	regulatory region 475934	1700 bp proximal
Tssr118856	transcription start site region 118856	1504 bp downstream
Tssr118857	transcription start site region 118857	1264 bp downstream
Tssr118858	transcription start site region 118858	862 bp upstream