rs214969874 SNP Detail

Summary

• ID
  rs214969874
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47745824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATATATA TATATATATA
  TATATATATA TATATATATA TATATATAAA ATTTTAATGT GTATGAGTAT TTGCCTGTGT
  GTGTGCAGTG CACACATCTG ATCCCCTGTA ACCGGAACTA CAGATCACTA TCCACTGCCA
  CGTGGTTGCT TGGAACTGAA AAGACAGCCA GGGCTCTTTA CTTCTGAGCC ATCTCCTCAG
  V
  CCCCCCAAAT CTGGTTTCTA AAAATTACAT TCATAGTCAG GCATGCAGTA TACCTTTAAT
  CCCAGTACTT GGGAGCAAAG GCAGGCAGAT CTCTATGAAT TTAAAGCCAG CTTGGTCTAT
  ATAGAAAGTT TCATGCCAGC CAGAGCTACA AAGTAACATT TTGTCTCAAA AGAATATTCC
  AGGAGAGAAG AATCTGGTGT                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398346250	MGP_WTSI_17_47571848	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	G	C	C	G	G	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214969874					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C	C	C	G	C	C	G	G	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398346250	MGP_WTSI_17_47571848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47745824 () rs orientation: forward

Symbol	Name	Function Class
AI661453	expressed sequence AI661453	1740 bp upstream
Cimip3	ciliary microtubule inner protein 3	within coordinates
Cpgi9259	CpG island 9259	1295 bp proximal
Rr339933	regulatory region 339933	1376 bp proximal
Tssr144911	transcription start site region 144911	1686 bp upstream
Tssr144912	transcription start site region 144912	1702 bp upstream
Tssr144913	transcription start site region 144913	1717 bp upstream
Tssr144914	transcription start site region 144914	1748 bp upstream
Tssr144915	transcription start site region 144915	1832 bp upstream
Tssr148434	transcription start site region 148434	1632 bp upstream
Tssr148435	transcription start site region 148435	1469 bp upstream
Tssr148436	transcription start site region 148436	1443 bp upstream