rs214978073 SNP Detail

Summary

• ID
  rs214978073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131649195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCGCATC CCTCCCCCGG
  AGCCCGGCCC GTCGGGTCAG TGTCTGCCTC TCTGCTCTTC CCCGCAGAGC GCCCGGACGA
  CCGCGCGATG ACGGCCGGGA GCCCCGGAGA CGGCGGCGCG CGCAGGAGCC CCGAGGGCCG
  CGTTTCGCGC CTGGGCCGCC GCTTGGGCCG GCGGAGGCGG CCGCGCTCCC CGCCAGAGCC
  R
  CTGCGGGTGC GGGCTCGGCT GCGGCTGCGT TCGCCGTCGG GGGCGTTCGC GGCGCTGGGC
  GCGCTCGTGG TGCTGGTGGG CATGGGCATC GCCGTGGCCG GCTACTGGCC CGGCCGCGCC
  TCCCACACCC ACGCCCCGAG GACCGGCCGC GCGCACGGGC CGCACGAGCG CCTGCGGCTG
  CTGGGACCGG TAATCATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363283909	MGP_WTSI_4_131477799	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214978073					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363283909	MGP_WTSI_4_131477799	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131649195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	within coordinates
Epb41	erythrocyte membrane protein band 4.1	1529 bp downstream
Gm12992	predicted gene 12992	1855 bp upstream
Gm50475	predicted gene, 50475	356 bp upstream
Rr100128	regulatory region 100128	within coordinates
Tmem200b	transmembrane protein 200B	within coordinates
Tssr1320	transcription start site region 1320	190 bp downstream
Tssr39357	transcription start site region 39357	1284 bp downstream
Tssr39358	transcription start site region 39358	724 bp downstream
Tssr39359	transcription start site region 39359	677 bp downstream
Tssr39360	transcription start site region 39360	1543 bp upstream
Tssr43616	transcription start site region 43616	1177 bp upstream
Tssr43617	transcription start site region 43617	862 bp upstream