rs214979620 SNP Detail

Summary

• ID
  rs214979620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41495549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAGCATT TGTTGCTTTT
  ACAGAGAACC TGGGTCCGGT TCCCAGCATC CACATGGTGG CTCACAACCA TCCATAACGC
  TAGTTCCAGG GCATCTGATG CCCTTTCCTG ACCTCCACAA GCACCAGGCA TGTATGTGGT
  GCATGCATGC ATGCATGCAT ACATACATAC ATACATGCAG GCATCGCTTA TGCATAAAAT
  Y
  GGTCTTTTTA AACCCCCAAG AATCCTTGTT TTTAAGCAAG AAAACAACAA ATACTACTTC
  AATAGCTCTC TTTTATTGAG CACCTGCTTT GTGTCAGGCA CTTTCCACAT GTCTGTGCTT
  ATTATTAAAT GACCTCAGAG GTAGGTTTTA TATCACTCTT ACATAGGAAA AACTGAGGCT
  CAGTGGGGTA AGCAGCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321092828	CHEV_4_41442582	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214979620					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41495549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14157	CpG island 14157	1840 bp proximal
Myorg	myogenesis regulating glycosidase (putative)	55 bp downstream
Rr590654	regulatory region 590654	670 bp distal
Rr590655	regulatory region 590655	183 bp proximal
Tssr41339	transcription start site region 41339	770 bp downstream