rs214989024 SNP Detail

Summary

• ID
  rs214989024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66208803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAAGCGT TGCCCAGAGA
  TGGTGAGATG GATTGAATTT CCCGTGCTGA TGGAAGGGTG TGCATATTAC CACAGGCTCA
  CTTGGATAGC CTTGGGAGGC TGAGGGCCCC CTAAGGGGAG CCCAGGGCTG TGCAGTGAGT
  GGGGATGCAG TACCATGGAA GGGGATAGGC GAGGGATGTT TGCATGTTTC GGGAGAGGTA
  Y
  CTTTAGTATT TGGCATGTTA AATATGCTCT GGAGACACAG GAAATTCATC TGCCCTGCCT
  CAGGCTCTTA TGGGAAGAAA GGGACTCAGC TTGGAGCTCG GCCCCTCCAA CTCCAGATAG
  CCTGGCTCCT CTGTGCAGCC GGGCCATGGT TCTTCCCAGG GCCTCGCTGT CTCCAGTGTC
  TATAGAAGGG GTCAGTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367325	MGP_WTSI_14_66590191	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214989024					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367325	MGP_WTSI_14_66590191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66208803 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Rr297400	regulatory region 297400	602 bp distal
Rr297401	regulatory region 297401	2 bp distal
Tssr126247	transcription start site region 126247	1616 bp downstream
Tssr126248	transcription start site region 126248	1562 bp downstream
Tssr126249	transcription start site region 126249	1533 bp downstream
Tssr126250	transcription start site region 126250	820 bp downstream
Tssr126251	transcription start site region 126251	763 bp downstream
Tssr126252	transcription start site region 126252	745 bp downstream
Tssr126253	transcription start site region 126253	733 bp downstream
Tssr126254	transcription start site region 126254	699 bp downstream
Tssr126255	transcription start site region 126255	685 bp downstream
Tssr126256	transcription start site region 126256	451 bp downstream
Tssr126257	transcription start site region 126257	280 bp downstream
Tssr126258	transcription start site region 126258	201 bp downstream
Tssr126259	transcription start site region 126259	172 bp downstream
Tssr126260	transcription start site region 126260	372 bp upstream
Tssr126261	transcription start site region 126261	442 bp upstream
Tssr126262	transcription start site region 126262	463 bp upstream
Tssr126263	transcription start site region 126263	1962 bp upstream
Tssr126264	transcription start site region 126264	1982 bp upstream
Tssr129260	transcription start site region 129260	1997 bp downstream