rs214989141 SNP Detail

Summary

• ID
  rs214989141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101166519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCAGCAC CCTCTGCCTC
  AGCACCCTCT GCCTCAGCAC CCTCTGCCTC AGCACCCTCT GCCTCAGCAC CCTCTGCCTC
  AGTGTTCCTG TGTGACCTGT CTTTTCAACT AGAAAGTCTA GAACTGTACA GACCCCAGAG
  TTGGAGGTGG AAAGGGACAC TAGGTCCTGG AGCCTCCTCT GTGGGCTTTT TTGACCAGAT
  R
  AGAACGTAAG GGCCTCCTCC AGCTACCCCT GGTCATTCAG GTGCTTCAGG TTTGTGACCT
  TTGCTGAGAC CCTGGATGCT GCAGCAAACA GACATCTGCT TTAGCAGAGG GACAGCTTGT
  CTCTGTGCAT CCGCTGGTAG GATCCTCCAC TCTGTCCAAT TAGCTTGCGG CTGCTGCTGG
  GTTCTGAGTG TTCTCTTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192961	MGP_WTSI_15_101099069	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214989141					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192961	MGP_WTSI_15_101099069	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101166519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7777	CpG island 7777	1390 bp distal
Gm63176	predicted gene, 63176	1970 bp upstream
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	678 bp downstream
Rr510000	regulatory region 510000	1782 bp distal
Rr510001	regulatory region 510001	1923 bp distal
Rr510002	regulatory region 510002	66 bp distal
Rr510003	regulatory region 510003	1430 bp distal
Tssr133214	transcription start site region 133214	1779 bp downstream
Tssr133215	transcription start site region 133215	1526 bp downstream
Tssr133216	transcription start site region 133216	1495 bp downstream
Tssr133217	transcription start site region 133217	1392 bp downstream
Tssr133218	transcription start site region 133218	764 bp downstream
Tssr133219	transcription start site region 133219	742 bp downstream
Tssr133220	transcription start site region 133220	647 bp downstream
Tssr133221	transcription start site region 133221	587 bp downstream
Tssr133222	transcription start site region 133222	749 bp upstream
Tssr133223	transcription start site region 133223	1438 bp upstream
Tssr133224	transcription start site region 133224	1481 bp upstream
Tssr133225	transcription start site region 133225	1492 bp upstream
Tssr133226	transcription start site region 133226	1513 bp upstream
Tssr133227	transcription start site region 133227	1521 bp upstream
Tssr133228	transcription start site region 133228	1539 bp upstream
Tssr133229	transcription start site region 133229	1550 bp upstream
Tssr133230	transcription start site region 133230	1628 bp upstream
Tssr133231	transcription start site region 133231	1660 bp upstream
Tssr133232	transcription start site region 133232	1679 bp upstream
Tssr133233	transcription start site region 133233	1707 bp upstream
Tssr133234	transcription start site region 133234	1725 bp upstream
Tssr133235	transcription start site region 133235	1758 bp upstream
Tssr133236	transcription start site region 133236	1807 bp upstream
Tssr133237	transcription start site region 133237	1829 bp upstream
Tssr133238	transcription start site region 133238	1862 bp upstream
Tssr133239	transcription start site region 133239	1904 bp upstream
Tssr133240	transcription start site region 133240	1996 bp upstream
Tssr136545	transcription start site region 136545	1661 bp downstream
Tssr136546	transcription start site region 136546	1783 bp downstream
Tssr136547	transcription start site region 136547	1859 bp downstream
Tssr136548	transcription start site region 136548	1869 bp downstream
Tssr136549	transcription start site region 136549	1903 bp downstream