rs214999657 SNP Detail

Summary

• ID
  rs214999657
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31147049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAAAGT GTGGTCCAGA
  AAAAGCCTAC CCATTCGCAG CAGAGCTAGG CACATTGACT CTGCTTATTT CTACTTGTAT
  CCAACCTTTA CCTTTAGGCC AAGACCTAGG GAATTCAAGG GCAAAGTGAA TTTTATTTTG
  TAATTGAAGA ACAATGGTGA AAATGTCCCC AAAGCTTGGT TTTGATTGAC TCTAGCCACA
  K
  GGCTGTGACT AGTGTCTCAA TTGATATACA TAAAACCACC CTTTTCTCAA AAACAGATTC
  CTCGAGAGGA CAAAAGAACA GGAAGATAAT GTATTTGATT TTTCTAAAAA GACTATTATC
  CAATTAATTT TGTTTCTCAA GCCTTTGACC ATGCTAGCAA GTAATTACTT TTATGGCTGG
  AAAGATGACT ACTAAATACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433234	MGP_WTSI_3_30991822	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214999657					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433234	MGP_WTSI_3_30991822	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31147049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	806 bp proximal
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	997 bp upstream
Rr397631	regulatory region 397631	616 bp upstream
Rr574878	regulatory region 574878	1525 bp distal
Rr574879	regulatory region 574879	507 bp proximal
Rr574880	regulatory region 574880	1377 bp proximal
Rr574881	regulatory region 574881	1668 bp proximal
Tssr28705	transcription start site region 28705	1171 bp downstream
Tssr28706	transcription start site region 28706	992 bp upstream
Tssr28707	transcription start site region 28707	1117 bp upstream
Tssr28708	transcription start site region 28708	1766 bp upstream
Tssr28709	transcription start site region 28709	1794 bp upstream
Tssr28710	transcription start site region 28710	1819 bp upstream