rs215001541 SNP Detail

Summary

• ID
  rs215001541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137742867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAATGCC AGTATGGGTG
  CCAAGAAAGA AAAATGGCAG TTGGGAGTTC GCTTTTTTTC TTGCCAGTTG CAGAATAGAC
  CCTTTATGTG TGTGCAGATT CTCCTTCATA ATGATGAAGG GATAATATGG GACAGGTGGG
  AGAGGGCTGG AGATGGGAAA GAGCTGGTCT GTAGCCAGCT GGGATTGGTT CTCAGGTATA
  Y
  GCACGGGGTA GTTGTGTGGA CATGGGTGTG TGTCCAAGCA CTTGGGGAAG CAGAAGTGAG
  CAACTTCATC TTCCCATCTA CCTAAGTGTT TATATGAGGG ACAAAGATGA GAAGGTAGCA
  ATGCCTGTTC TGGGCTGAGG AGTGGCTCAG CAGGTAAAAG TTCTTGCTAC TCAAGCATGA
  GGACCTGAGT TCAAATCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884350	MGP_WTSI_5_138185833	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs215001541					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884350	MGP_WTSI_5_138185833	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137742867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16849	CpG island 16849	1402 bp proximal
Gm57848	predicted gene, 57848	1407 bp upstream
Rr622970	regulatory region 622970	73 bp distal
Rr622971	regulatory region 622971	635 bp proximal
Rr622972	regulatory region 622972	1889 bp proximal
Tsc22d4	Tsc22 domain family, member 4	1407 bp upstream
Tssr49366	transcription start site region 49366	1146 bp upstream
Tssr49367	transcription start site region 49367	1348 bp upstream
Tssr49368	transcription start site region 49368	1362 bp upstream
Tssr49369	transcription start site region 49369	1508 bp upstream
Tssr49370	transcription start site region 49370	1578 bp upstream
Tssr49371	transcription start site region 49371	1633 bp upstream
Tssr49372	transcription start site region 49372	1750 bp upstream
Tssr49373	transcription start site region 49373	1942 bp upstream